Streptococcus pneumoniae Hungary 15/17/19A6

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Strain View Genome Genes Proteins Reads Contigs Scaffolds
Hu15 Artemis FASTA, EMBL, GBK FASTA FASTA tar.bz2(Illumina) FASTA FASTA
Hu15 plasmid Artemis FASTA, EMBL, GBK - - - - -
Hu17 Artemis FASTA, EMBL, GBK FASTA FASTA tar.bz2(Illumina) FASTA FASTA
Hu17 plasmid Artemis FASTA, EMBL, GBK - - - - Scaffold/contig part at genome end was made reverse complement manually.

Hu15 454 Artemis FASTA, EMBL, GBK - - - - - link
Hu17 454 Artemis FASTA, EMBL, GBK - - - - - link

Blast soon available at Multiblast

Assembly details (Illumina)
 Hu15Hu17

Sequencing technology: Illumina paired-endIllumina paired-end
# of files: 22
Reads 2.246.5542.230.196
Nucleotides 339.229.654336.459.596
Spn Hu19A6-Coverage (2.245.615 nt) 151x150x

Assembly: gsAssembler (Newbler) 2.6gsAssembler (Newbler) 2.6
Contigs (>=100 bp) 176200
Scaffolds: 3638
N50 scaffolds: 78.675,5 nt107.441,6 nt
Assembly details: TEXTTEXT
Plasmid scaffolds 11
Genome scaffolds: 3537
Nucleotides in scaffolds (without N): 2.112.376 nt2.112.155 nt
Remaining Spn Hu19A6-Coverage (2.245.615 nt) 0,94x0,94x
Analysis

Plasmids

Alignable regions Not alignable regions SNPs
Aligned regions Unaligned regions Aligned SNPs
There are no differences between Hu15 and Hu17 plasmids except gaps. To make any statement about possibly missing DNA gaps should be sequenced.


Regions in addition to reference Hu19A6: 33
Missing regions from reference: 32 and one in gap
Exchanged reference regions: 55